Organ-on-Chip Design: Principles, Challenges, and Emerging Tools

Organ-on-Chip (OoC) systems are reshaping the landscape of biomedical research by offering more physiologically accurate models than traditional 2D cultures and animal testing. These microengineered platforms simulate the structure and function of human organs using microfluidics, tissue engineering, and cell biology.

As researchers and engineers seek to design increasingly complex OoC models, the importance of robust, adaptable, and validated Organ-on-Chip design methodologies becomes evident. In this article, we explore the foundational principles of OoC design, from fluid dynamics to materials science, and highlight digital tools such as FLUI’DEVICE that support rapid prototyping and simulation of microfluidic devices.

Organ-on-Chip cross-sectional schematic showing dual microchannels and membrane
Grant, Jennifer & Ozkan, Alican & Oh, Crystal & Mahajan, Gautam & Prantil-Baun, Rachelle & Ingber, Donald. (2021). Predicting drug concentrations in PDMS microfluidic organ chips. 10.1101/2021.05.01.442248.

What is an Organ-on-Chip?

An Organ-on-Chip is a microfluidic platform that replicates aspects of human organ function in vitro. These chips combine living cells with microchannels, porous membranes, and dynamic flow conditions to recreate the biomechanical and biochemical environment of tissues such as the lung, liver, kidney, or intestine.

OoCs are used in:

  • Drug development and screening

  • Toxicology testing

  • Disease modeling

  • Personalized medicine

Unlike static cell cultures, Organ-on-Chip systems introduce fluid shear stress, cyclic strain, and compartmentalized co-culture, mimicking in vivo physiology with much higher fidelity.

Core Principles of Organ-on-Chip Design

Microfluidic Architecture and Flow Control

The microfluidic layout is central to Organ-on-Chip design. It dictates how fluids, nutrients, and signaling molecules move through the device and how cells respond to these stimuli.

Key considerations include:

  • Channel dimensions: Width and height affect laminar flow and shear stress.

  • Flow regimes: Organs experience vastly different shear levels : gut epithelium vs. arterial endothelium, for example.

  • Parallel vs. serial flow: Needed for multi-organ models (also called “Body-on-Chip”).

💡 Tip: CFD simulations can be used to validate flow distribution before fabrication.

Material Selection and Cell Compatibility

An often-overlooked aspect of Organ-on-Chip design is the choice of material. While PDMS is commonly used, it absorbs small hydrophobic molecules, which is problematic in drug screening studies.

Alternative materials include:

  • COP/COC: Thermoplastics used in mass production

  • PMMA: Good for prototyping but limited gas permeability

  • Flexdym™: A soft, transparent elastomer that combines the ease of PDMS with improved chemical compatibility and lower small molecule adsorption especially useful for barrier models and organ co-cultures

Each material affects:

  • Cell adhesion and viability

  • Optical transparency for imaging

  • Device bonding methods

🧪 If you’re testing new materials in early-stage development, it’s advisable to validate surface treatments, protein adsorption, and cell behavior.

Cell Culture Configurations and Barrier Functions

Many Organ-on-Chip systems rely on dual-channel structures separated by a porous membrane. These allow the co-culture of epithelial and endothelial cells to model interfaces such as:

  • The alveolar-capillary barrier (lung-on-chip)

  • The intestinal wall (gut-on-chip)

  • The blood–brain barrier

In advanced designs, 3D scaffolds or organoids are introduced to mimic more complex tissue morphology and function.

How to Design an Organ-on-Chip with FLUI'DEVICE

FLUI’DEVICE is a web-based CAD and simulation tool developed specifically for microfluidic design. It allows researchers, engineers, and students to create microfluidic devices, such as Organ-on-Chip platforms, quickly and intuitively, even without prior CAD experience.

Key Features for OoC Design

  • Modular design: Build dual-channel systems, T-junctions, serpentine mixers, and more using predefined building blocks

  • Templates : Use a pre-made OoC designed from litterature
  • Simulation: Visualize flow paths and test channel performance under different flow rates

  • Export: Generate files in STL, DXF, or SVG formats for rapid prototyping using soft lithography, 3D printing or micro-milling.

  • Cloud-based: Access your projects from anywhere and collaborate with colleagues or students

Organ-On-Chip Design

This Angiogenesis-On-Chip device is available on FLUI’DEVICE to assess angiongenic sprouting and functional vessel formation. 

📌 You can try for free  FLUI’DEVICE to experiment with simple Organ-on-Chip layouts, or upgrade to access advanced modules and exports.

Organ-On-Chip design

Biological Integration in Organ-on-Chip Design

Co-Culture and Barrier Models

OoC designs must accommodate:

  • Multiple cell types with distinct media requirements

  • Membranes or gel interfaces to allow signaling and transport

  • Mechanical stimuli such as cyclic strain (lung) or peristalsis (gut)

These require precise microchannel geometry, controlled compartmentalization, and sometimes actuation systems.

Real-Time Monitoring

Modern OoC designs integrate:

  • TEER electrodes for barrier integrity

  • Oxygen and pH sensors

  • Optical windows for live-cell imaging

Organ-on-chip model with electrodes
Leung, C.M., de Haan, P., Ronaldson-Bouchard, K. et al. A guide to the organ-on-a-chip. Nat Rev Methods Primers 2, 33 (2022). https://doi.org/10.1038/s43586-022-00118-6

Organ-on-Chip Design Challenges

Despite its promise, the field faces technical challenges:

ChallengeWhy it matters
Material absorptionAffects drug concentration measurements
ReproducibilityLimits comparison across labs/devices
Fluidic complexityMulti-organ systems can be unstable
Cell sourcingPrimary cells often vary between donors

Designers must also balance biological accuracy with manufacturability a key consideration when moving from prototype to scalable production.

Conclusion: Smarter Organ-on-Chip Design Starts with the Right Tools

Effective Organ-on-Chip design requires a deep understanding of biology, fluid mechanics, and materials but also the ability to iterate quickly. Tools like FLUI’DEVICE empower researchers to create, simulate, and prototype microfluidic OoC systems in a streamlined way, accelerating the journey from concept to functional device.

As Organ-on-Chip technology moves toward clinical and industrial adoption, the convergence of design automation, accessible CAD tools, and robust material selection will play a key role in scaling this transformative technology.

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